Publications

Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding

Abuelanin M, Kaya G, Lake JA, Lambert C, Wu MV, Berendzen KM, Wood J, Krasheninnikova K, Solomon NG, Donaldson ZR, Bales KL, Howe K, Korlach J, Manoli D, Tollkuhn J, Dennis MY

Cell Genomics, 101336

Vole assemblies and genome browser ↗ Full text (PDF) ↗ Cell Press T2T collection ↗ Talk (Biology of Genomes 2026) ↗

CiFi: accurate long-read chromosome conformation capture with low-input requirements

McGinty SP, Kaya G, Sim SB, Makunin A, Corpuz RL, Quail MA, Abuelanin M, Lawniczak MKN, Geib SM, Korlach J, Dennis MY

Nature Communications 17, 215

Full text ↗

The Great Genotyper: a graph-based method for population genotyping of small and structural variants

Shokrof M, Abuelanin M, Brown CT, Mansour TA

GigaScience 14, giaf112

Full text ↗ Supporting data ↗

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Irber L, Pierce-Ward NT, Abuelanin M, Alexander H, Anant A, Barve K, et al.

Journal of Open Source Software 9(98), 6830

Source (sourmash) ↗ Source (branchwater) ↗

Insilico codon bias correction for transgenic biological protein sequences for vaccine production

Abuelanin M, Fares M, El-Hadidi M

Novel Intelligent and Leading Emerging Sciences Conference (NILES), 465–468

Scalable computational frameworks for next-generation sequencing analysis and gene set integration

Abuelanin M

PhD dissertation, University of California, Davis

Full text ↗