Publications

Single-library chromosome-scale diploid assemblies of vole genomes resolve a species-specific duplication implicated in pair bonding

Abuelanin M, Kaya G, Lake JA, Lambert C, Wu MV, Krasheninnikova K, Wood J, Solomon NG, Donaldson Z, Bales KL, Howe K, Korlach J, Manoli D, Tollkuhn J, Dennis MY

Cell Genomics (accepted)

Assemblies and browser ↗

CiFi: accurate long-read chromosome conformation capture with low-input requirements

McGinty SP, Kaya G, Sim SB, Makunin A, Corpuz RL, Quail MA, Abuelanin M, et al.

Nature Communications

The Great Genotyper: a graph-based method for population genotyping of small and structural variants

Shokrof M, Abuelanin M, Brown CT, Mansour TA

GigaScience 14

sourmash v4: a multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Irber L, Pierce-Ward NT, Abuelanin M, Alexander H, Anant A, Barve K, et al.

Journal of Open Source Software 9(98), 6830

In silico codon bias correction for transgenic biological protein sequences for vaccine production

Abuelanin M, Fares M, El-Hadidi M

Novel Intelligent and Leading Emerging Sciences Conference (NILES)

Scalable computational frameworks for next-generation sequencing analysis and gene set integration

Abuelanin M

PhD dissertation, University of California, Davis