Mohamed Abuelanin
I pursue biological questions by designing computational methods and turning them into software that expands what scientists can ask of their data. My work spans computer science, bioinformatics, and software engineering, from new algorithms to large-scale genomic analysis.
Postdoctoral Researcher, Department of Biochemistry and Molecular Medicine
Dennis Lab Genome Center MIND Institute University of California, Davis
PhD in Computer Science
More about me →Selected work All work →
- Vole genomes from a single library Haplotype-resolved chromosome-scale assemblies of prairie and meadow voles, each generated from a single combined HiFi and CiFi library. Cell Genomics, 2026 →
- CiFi Software and workflows for long-read chromosome-conformation capture, combining sequencing and scaffolding signals in one PacBio library. Method and software, 2025 →
- The Great Genotyper Small and structural variant genotyping across pangenome graphs at cohort scale. Graph genotyping, 2025 →
- sourmash Scalable genomic search and sketching for large sequence collections. Contributor, 2024 ↗ (opens an external site)
News All news →
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Upcoming Invited talk at the T2T face-to-face meeting in Santa Cruz.
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Vole genome study published in Cell Genomics, part of the Cell Press Telomere-to-Telomere collection. The assemblies and genome browser are live at voles.dennislab.org. →More
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Talk at Biology of Genomes on chromosome-scale vole assemblies and the prairie vole-specific Avpr1a duplication. Recording.